PathogenApiServiceImpl.java

/*
 * Copyright 2025 Global Crop Diversity Trust
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 *   http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */

package org.gringlobal.api.v2.facade.impl;

import java.util.List;

import org.gringlobal.api.model.PathogenDTO;
import org.gringlobal.api.model.TaxonomySpeciesDTO;
import org.gringlobal.api.v2.facade.PathogenApiService;
import org.gringlobal.model.community.Pathogen;
import org.gringlobal.service.PathogenAttachmentService;
import org.gringlobal.service.PathogenService;
import org.gringlobal.service.PathogenTaxonomySpeciesMapService;
import org.gringlobal.service.filter.PathogenFilter;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.stereotype.Service;
import org.springframework.transaction.annotation.Transactional;

@Service
public class PathogenApiServiceImpl extends APIFilteredServiceFacadeImpl<PathogenService, PathogenDTO, Pathogen, PathogenFilter> implements PathogenApiService {

	@Autowired
	private PathogenAttachmentService pathogenAttachmentService;
	
	@Autowired
	private PathogenTaxonomySpeciesMapService pathogenTaxonomySpeciesMapService;

  @Override
  protected Pathogen convert(PathogenDTO source) {
    return mapper.map(source);
  }
  
  @Override
  protected PathogenDTO convert(Pathogen source) {
    return mapper.map(source);
  }


  @Override
	@Transactional(readOnly = true)
	public List<TaxonomySpeciesDTO> getPathogenSpecies(final Long pathogenId) {
		return mapper.map(pathogenTaxonomySpeciesMapService.getPathogenSpecies(service.get(pathogenId)), mapper::map);
	}

}