PathogenTaxonomySpeciesMapServiceImpl.java

/*
 * Copyright 2026 Global Crop Diversity Trust
 * Licensed under the Apache License, Version 2.0
 * See LICENSE file in project root folder or http://www.apache.org/licenses/LICENSE-2.0
 */

package org.gringlobal.service.impl;

import java.util.List;

import org.gringlobal.model.TaxonomySpecies;
import org.gringlobal.model.community.Pathogen;
import org.gringlobal.model.community.PathogenTaxonomySpeciesMap;
import org.gringlobal.persistence.community.PathogenTaxonomySpeciesMapRepository;
import org.gringlobal.service.PathogenTaxonomySpeciesMapService;

import org.springframework.security.access.prepost.PreAuthorize;
import org.springframework.stereotype.Service;
import org.springframework.transaction.annotation.Transactional;
import org.springframework.validation.annotation.Validated;

@Service
@Validated
public class PathogenTaxonomySpeciesMapServiceImpl extends CRUDService2Impl<PathogenTaxonomySpeciesMap, PathogenTaxonomySpeciesMapRepository> implements PathogenTaxonomySpeciesMapService {

	@Override
	@Transactional(readOnly = true)
	public List<TaxonomySpecies> getPathogenSpecies(Pathogen pathogen) {
		return repository.getSpeciesByPathogen(pathogen);
	}

	@Override
	@Transactional
	@PreAuthorize("hasAuthority('GROUP_ADMINS') or @ggceSec.actionAllowed('Pathogen', 'WRITE')")
	public PathogenTaxonomySpeciesMap create(PathogenTaxonomySpeciesMap source) {
		PathogenTaxonomySpeciesMap saved = new PathogenTaxonomySpeciesMap();
		saved.apply(source);
		return repository.save(saved);
	}

	@Override
	@PreAuthorize("hasAuthority('GROUP_ADMINS') or @ggceSec.actionAllowed('Pathogen', 'WRITE')")
	public PathogenTaxonomySpeciesMap createFast(PathogenTaxonomySpeciesMap source) {
		return super.createFast(source);
	}

	@Override
	@Transactional
	@PreAuthorize("hasAuthority('GROUP_ADMINS') or @ggceSec.actionAllowed('Pathogen', 'WRITE')")
	public PathogenTaxonomySpeciesMap update(PathogenTaxonomySpeciesMap input, PathogenTaxonomySpeciesMap target) {
		target.apply(input);
		return _lazyLoad(repository.save(target));
	}

	@Override
	@PreAuthorize("hasAuthority('GROUP_ADMINS') or @ggceSec.actionAllowed('Pathogen', 'WRITE')")
	public PathogenTaxonomySpeciesMap update(PathogenTaxonomySpeciesMap updated) {
		return super.update(updated);
	}

	@Override
	@Transactional
	@PreAuthorize("hasAuthority('GROUP_ADMINS') or @ggceSec.actionAllowed('Pathogen', 'WRITE')")
	public PathogenTaxonomySpeciesMap updateFast(PathogenTaxonomySpeciesMap updated, PathogenTaxonomySpeciesMap target) {
		target.apply(updated);
		return repository.save(target);
	}

	@Override
	@Transactional
	@PreAuthorize("hasAuthority('GROUP_ADMINS') or @ggceSec.actionAllowed('Pathogen', 'WRITE')")
	public PathogenTaxonomySpeciesMap remove(PathogenTaxonomySpeciesMap entity) {
		return super.remove(entity);
	}

}